NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370494_007478

Scaffold Ga0370494_007478


Overview

Basic Information
Taxon OID3300034130 Open in IMG/M
Scaffold IDGa0370494_007478 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Collapse_03_16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2877
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9149Long. (o)-147.8357Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046467Metagenome / Metatranscriptome151N
F065927Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0370494_007478_1016_1351F046467GAGGVSDLRDPDRDPDHLLAPERLIELESAAEPARQRLSEVALPALEIVQDWLCAELAVARERALEVADFEFAECVCELEQRLRFPGSFLRDARASLKIQSVLGARAKLRLIQGG
Ga0370494_007478_612_1007F065927AGGAGMDDPRPPLKNLDSCELLPDSPAARSLQALDHFVTSTGMKVSYYALSLEQVPVDFFADPDGAWSYEVLARAAGFASHSGVAIGALKLDFNGHPNGAAVVTLNALTRPYVAIIECPIAYHYVAQVDQTASSAA
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