NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370494_030201

Scaffold Ga0370494_030201


Overview

Basic Information
Taxon OID3300034130 Open in IMG/M
Scaffold IDGa0370494_030201 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Collapse_03_16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1390
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9149Long. (o)-147.8357Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003764Metagenome469Y
F004301Metagenome / Metatranscriptome444Y
F042119Metagenome158N

Sequences

Protein IDFamilyRBSSequence
Ga0370494_030201_151_576F004301GGAGMTAMQFSLFDARSADATVGSEPSVNARNAKRQLDTLRNQLATAQADLEDVDYNLSIVAMHQRASREGKIDANWWDAAMRFGMLDPGEEPVYRLGSYPVKVLRWIRHLIFTLNAERRDVLSAIAELEPKVAALSQIIGNAIQ
Ga0370494_030201_585_959F003764GAGMQIQLDSPYAHDENPAALLAGAEIEAAGLHRCLKIVCLWSQSNALPRPRREEIIEEERRIASLYAAILFEIGSAFGIEQADELKVRIEAACILNNWECPPAEQGLLFPIPNYSATEASPATARK
Ga0370494_030201_969_1388F042119GAGMNTIIREVNPARLAWGTFDHAKSDYMNEGDIPASYSGDSIAMGQPVRKPFRMDGEMWVAIGLSNDGARAYRMCPMRIFNGTPTNYRDKSGSAERAEEARNDPNGFYDRMTVKHGGQVFVLCGPEVRIVASQHEDVFVPQV
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