NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334916_026539

Scaffold Ga0334916_026539


Overview

Basic Information
Taxon OID3300034133 Open in IMG/M
Scaffold IDGa0334916_026539 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 12HMC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)719
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076051Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0334916_026539_3_401F076051GGAMGFFKAAKDVKNLTQHHGGMPSIRGSFKDIASMADDRGEGEVIKKGVPTKAIVKGFAEPVPGDRFAMHIPLEIHPPGGAPYTVDYVFPTTRMKAAITVGMELPVKVLQEDPSRVAVQWDAQQASIAAAGGDMA
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