NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334933_000633

Scaffold Ga0334933_000633


Overview

Basic Information
Taxon OID3300034136 Open in IMG/M
Scaffold IDGa0334933_000633 Open in IMG/M
Source Dataset NameSub-biocrust soil microbial communities from Mojave Desert, California, United States - 29HNS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7034
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.3778Long. (o)-117.6098Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001042Metagenome / Metatranscriptome794Y
F017778Metagenome / Metatranscriptome238Y

Sequences

Protein IDFamilyRBSSequence
Ga0334933_000633_3313_3756F017778N/AMARGKTKGKRGGIRLGAGNPYKWKHRETKPVRLPIALIPKILEIAQLIDGQEYIDRVEHEFDDEEGKPKSYNGYYAAQLSYLRTGNDALAEEVNKLRIENEALKAQLREINNGVLSEPNPDFSSLLLVREPKPLAQNRRKKRKDIIL
Ga0334933_000633_737_1123F001042AGGCGGMTTSHLIGGNEAPNVPKDFEADADNKIVIDKLLVNKLTELLINSIYSVHVSRRSEIFLTSLDMHLADFSISNKNDIVCREFTEKSSLLLESYQKDVPKSLGKAESCLGEAIDLINLIVSASEAEVNNG
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