NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334933_023848

Scaffold Ga0334933_023848


Overview

Basic Information
Taxon OID3300034136 Open in IMG/M
Scaffold IDGa0334933_023848 Open in IMG/M
Source Dataset NameSub-biocrust soil microbial communities from Mojave Desert, California, United States - 29HNS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)880
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Tychonema → unclassified Tychonema → Tychonema sp. LEGE 06208(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.3778Long. (o)-117.6098Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006886Metagenome / Metatranscriptome362Y

Sequences

Protein IDFamilyRBSSequence
Ga0334933_023848_15_479F006886N/AMYSEFDSDFDYLNSETPQQFEQQNQTKTPEVTNIERFWTLTGNWGEFGSYFGAGLSASLIVRAIPALIPAAVILIPAVSLGLAVFSFSSEGAAKLRSQLILIAVGTALIAGNWDAWQAWIIANSQMLIFSFVLIVITVGFVIAQVWSKLSNVGK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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