NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334958_019969

Scaffold Ga0334958_019969


Overview

Basic Information
Taxon OID3300034141 Open in IMG/M
Scaffold IDGa0334958_019969 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 54SNC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1479
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.3778Long. (o)-117.6098Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011201Metagenome / Metatranscriptome293Y
F042710Metagenome157N
F083444Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0334958_019969_1174_1404F042710GGAGMAENSGENCERSQIFTASSARDCRYVDVLKARAEELGLDSDCVGDKRKRETWEAVLETHGEEKPAKPQFVVKPNQP
Ga0334958_019969_42_383F011201N/AMKKSKAKSKNGHGGARAGAGRRWRWKHQPVKMVRLPVAFLEKILELADYMDQHDGQLPFAEASVITSGHSSKTLSGEELKEILGKEKAGKLAQKVMVGDEEVLVSDETFRQQH
Ga0334958_019969_594_1142F083444GAGGMLNNMSEVFSCEEVALENTHLLPEYGKKVIYFVTAMQGESKTFLYIGFTINLRRKFKNHHRKIEFEFLNRIGYQIKISWIVLPNGIREKEGHVVQRCYIQAFEPKLNEDQNSIATVQAEELKKQFENWEQRRYEYLKKEIENWEQSGDDKDTIIKKIWEVCKQPFDDKHLILSPSKSQKTAV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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