NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334964_000019

Scaffold Ga0334964_000019


Overview

Basic Information
Taxon OID3300034146 Open in IMG/M
Scaffold IDGa0334964_000019 Open in IMG/M
Source Dataset NameSub-biocrust soil microbial communities from Mojave Desert, California, United States - 60SNS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)169802
Total Scaffold Genes157 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)81 (51.59%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.3778Long. (o)-117.6098Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001605Metagenome / Metatranscriptome664Y
F002548Metagenome / Metatranscriptome549Y
F092677Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0334964_000019_151776_152414F001605N/AMSSDRPLPEPQSLSQLPIKPLDEVIRQLRATRNDIIRFGVWNVRNLNDDEFNKTDDKKLLGYFRQDLLETRFLSKGRRIDLVQLWRWFDDQMSGIEPMLIDGEEVFVNIQDKDLEKVRKRIAEIDSFFPTLLSDDLEGFRRVKYKLRRTVMRLTYDLHHLFKRLEKYRKNLYISTRGDFPRIERERVPLEAVAEIPEPMVEDHEHDHEEMEA
Ga0334964_000019_39699_40067F002548GAGVIVVTATRNVAAAVPVCAGESTMPKYEYEPMTEDHSALFERKTLRRVRMIVELTLNLISSDRTVSHREARCLVECARKAILELSPGFEYRYEKIVQPYFDRVLQTRWPDEELRYLSPHEPVN
Ga0334964_000019_41004_41645F092677N/AMRVFVLVSVLGGVLLTGCGGDARIAAGNDSQIAAGPDHQNEWTVVLQHKKAAAAPDATPAQKQVYADSVRAFVQKHPHHGRGREVWERIQLEFAEELAQHGRHRDALRFYRAVLEHNPMNAKAQAGAELAADRLAVTREKLLALEKGMSHRQVSQLLGKPLPGWTEKRNRSVAEIEAWYYPTRSGGVAGVYFRDGKVFAAEESSHAREMRLGS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.