NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0364927_0001133

Scaffold Ga0364927_0001133


Overview

Basic Information
Taxon OID3300034148 Open in IMG/M
Scaffold IDGa0364927_0001133 Open in IMG/M
Source Dataset NameSediment microbial communities from East River floodplain, Colorado, United States - 18_j17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4016
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9499Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026217Metagenome198Y

Sequences

Protein IDFamilyRBSSequence
Ga0364927_0001133_2694_3383F026217AGGGGGMTLEIQASAAPLELLANDSRQPENRIMELAAWRSALAGELPKARLKRLLVAFYPALAGPGRYAFAAKVSQLEPGDGKELFLQLHAALKRPEADADAGWKRVLVALGASERELGDALANPSAEAVDLADVIRDHGLRSSPVAAAVIAYMLERHLPRLWGRLADSLRAHYGVREEAVRYLRHEAARANEIEKWVQHLVESYVVSARPSEVFEGRRAGREALWAWTVLTESA
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