NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370498_000135

Scaffold Ga0370498_000135


Overview

Basic Information
Taxon OID3300034155 Open in IMG/M
Scaffold IDGa0370498_000135 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27916
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (65.52%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9142Long. (o)-147.8349Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020985Metagenome / Metatranscriptome221Y
F094124Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0370498_000135_10002_10229F094124N/AMRDFGDIDYERRIIRINREMHARDGEMLLDTLFHEELHRILPYLGERAISCMTRVLLPTLSHRYRSWLYSRIRRR
Ga0370498_000135_17632_17985F020985GGAGGMAKPIFTQLIERAREYVAVPSSWTRYTLALTRNNRDCEPTDAKAARFCAFGALVRAGYDLTGDVDQARHLAGQAAMWITGRETPEEAYEEIYTLNDGPREPSRKAVLNLFEKSLARA
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