NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0370498_002697

Scaffold Ga0370498_002697


Overview

Basic Information
Taxon OID3300034155 Open in IMG/M
Scaffold IDGa0370498_002697 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4017
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9142Long. (o)-147.8349Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002416Metagenome561Y
F009773Metagenome313Y

Sequences

Protein IDFamilyRBSSequence
Ga0370498_002697_2879_3304F002416AGGAGMKSLIELTAYPGLDYSRAAQIGRKLVALGSGVKATHGIVATGLMLTLGLISASAQTPSGSFFNGNSAQLGNSLRSITFFLAAAMIIAGIIFVAVGIITSGLRESLSTWKFITGAACFAFGGICAAVYAFSQGDTVPLDNQF
Ga0370498_002697_3362_3832F009773GAGGMRARPIRRNIYLPVVRFGVADSDWFTVLLISCAGYLAPVPFGITVLYVPLQMWTWLLATAGSIAFFNYIRIGRKPYWLQHKLKALFFHHRQHRAIPNGRKRAFTRSWILNNEAAHGWMRSDPQSERSSSTLILLDHNSRIQEAIEERWNESLLMTN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.