NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370498_004180

Scaffold Ga0370498_004180


Overview

Basic Information
Taxon OID3300034155 Open in IMG/M
Scaffold IDGa0370498_004180 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3083
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9142Long. (o)-147.8349Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007858Metagenome / Metatranscriptome343Y

Sequences

Protein IDFamilyRBSSequence
Ga0370498_004180_1451_1768F007858N/ALKVLCVASDAESLMALKNAAVSAEWELTPGATDEADAAGQIDADRPHIMIVFGSFDRLVQLAAGRFPGMRVITDRDTPGATEVATSLDEVRGLIKGSSRPGGPVR
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