NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370515_0010791

Scaffold Ga0370515_0010791


Overview

Basic Information
Taxon OID3300034163 Open in IMG/M
Scaffold IDGa0370515_0010791 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4334
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9123Long. (o)-147.839Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026328Metagenome / Metatranscriptome198Y
F067959Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0370515_0010791_3676_4011F067959GGAGMDLRRKTCLTAVAVLVLSLPIWARTDSAQLVIDHPVTIGTQQLEPGTYDLKANDAQNQINVVRADTGKTIASIPCEWVQLAQKPRQTEVLFNADRVVEIDFAGQTKGVAFH
Ga0370515_0010791_761_997F026328GGAGMKFHPIAIVGILLVAAGIAAMIHPQVAMPAKKQEIQVGEGKAIIETRRIVTFPRGFSVLLILAGAGQAFLTCKVRHRI
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