NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335016_0071945

Scaffold Ga0335016_0071945


Overview

Basic Information
Taxon OID3300034166 Open in IMG/M
Scaffold IDGa0335016_0071945 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Sep2012-rr0079
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2586
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007029Metagenome / Metatranscriptome359Y
F029049Metagenome / Metatranscriptome189Y
F066777Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0335016_0071945_1048_1557F029049N/AMSRVAKVVLDRSQEITAHRVGLERTITRNAEIQDASNFGQVYKNWHELVWQESEAAAAEIAVANYFGDYGFVPSIDNAHDTADVGENIEVKWTKHTNGHLILQNRGPGRPTDVAILVTGFSPVYVLLGWMPVHMAKVPKYKHPYQNNYWVPRSNLFEMQYLKRSNYGDV
Ga0335016_0071945_196_804F007029GAGMSFLDNYEDVNSRIKRFRAEFPSGRLVAFIENFDIEKGTILVRAEAYREYEDTVPSAVDYAFGNVNTYPQNMRKWMVEDTITSSYGRVIGLLSPSEGGRPTRQDMEKVETLPASADPWSTKASIEDMATMASSVLEIATQLGGELVAEAPRCSHGTMVWAEGTAKATGKPWAAYKCTERVRSNQCNPYWHVLGSDGKWKPQV
Ga0335016_0071945_875_1060F066777GGCGGMGELTFIKDGLATTIHDNGDMTVVAAKQCDECFKWHTEMGGFSVRDVSGEVVLWLCAQCR
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