NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335017_0021413

Scaffold Ga0335017_0021413


Overview

Basic Information
Taxon OID3300034167 Open in IMG/M
Scaffold IDGa0335017_0021413 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3739
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005733Metagenome / Metatranscriptome391Y
F056331Metagenome / Metatranscriptome137Y
F102561Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0335017_0021413_1359_1541F102561GGTGGMMRALDRWRHPVALSEAPVVIHRVMHPTSYRCIAMAIEIAIDSPAFFVAVNLLLPTTIAK
Ga0335017_0021413_2818_3036F056331N/AMISECVSCVPRVFLHASVVYVACGIEILDVQDIKIRVAMLVRESTYLRSSHGSRRRSASRYLPRTRVRDTHY
Ga0335017_0021413_3195_3305F005733GAGGMDRISGFMQSHSMLPSGVCSRRIGPADAMVIAVAVM
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