NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335017_0057571

Scaffold Ga0335017_0057571


Overview

Basic Information
Taxon OID3300034167 Open in IMG/M
Scaffold IDGa0335017_0057571 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2294
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005176Metagenome / Metatranscriptome409Y
F094927Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0335017_0057571_1142_1402F005176AGAAGGVQDPPEQEDKSSPSSSMELKFKLDTRLIVSCVVAVASAYGLLSVSIALDSILLAFDNAVILLLILFVLFGWRELLGEFKKRSSTAN
Ga0335017_0057571_671_1108F094927N/AMSFDFDPNNNNDRAEVDSNPEDVDSYLGGEGLYGRVPGGPQVGAANRSQGQPFGDQGLPIRLGQAQAHGGLGQARGGPVPRSAGQAPSIQGTLGRVPSHLSLAASAASASVLPTSGYFGSQKRKVVEINARRVICPEHARGAHGS
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