NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335061_0018614

Scaffold Ga0335061_0018614


Overview

Basic Information
Taxon OID3300034168 Open in IMG/M
Scaffold IDGa0335061_0018614 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME06Apr2016-rr0183
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3677
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000957Metagenome / Metatranscriptome821Y
F001923Metagenome / Metatranscriptome617Y
F003583Metagenome / Metatranscriptome478Y

Sequences

Protein IDFamilyRBSSequence
Ga0335061_0018614_1497_1781F000957N/AMSSFRHLDGMVGLLSEIFEINERILTGDICSAKTAIASTRMKKLLHHYHEALHEDGATKVSLQAYAAAGGWVGITYSYELDGFEVAGSQVPRRV
Ga0335061_0018614_3037_3363F003583N/AMGKAKPAKQSGSANLLLAVTLLTAFAGVSALSSAYIAGYVLDQLQSTDALVMIVTDAGLKSDSADLERNMSTATLALKSVRDLGWALAVGCLGVGVAVFLRSRRVSVS
Ga0335061_0018614_3323_3676F001923N/AESLPKELKDGVVASVLGGLAMTARLLLSTEPVSLGWVVRRVLAAAITAALVGYGIQDHIQSPGLRMAVVGAAGYAAPECLDYLMRYIKARGEKEVGAVTAKLKPHGKGKASKAKRKR
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