NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335061_0019464

Scaffold Ga0335061_0019464


Overview

Basic Information
Taxon OID3300034168 Open in IMG/M
Scaffold IDGa0335061_0019464 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME06Apr2016-rr0183
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3599
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014956Metagenome / Metatranscriptome258Y
F021732Metagenome / Metatranscriptome217Y
F031483Metagenome182N
F041648Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0335061_0019464_1085_1543F031483N/AMNILKGRVKYTAGKVFEGQYGPSINAAITLDNGTDIRVYGKPDDEKLKALQKDDVVTIIHDGKSYKVAFDMVTANELPEKAQTPTEGNNVQQAVNVAPKTNGKLTAEEISEKATFMTGIYADIFHQLQASGLEPAQAQPAAATIFIQIGKFF
Ga0335061_0019464_1518_1775F014956N/AMNIHEFVINVTTTVCPSHIVEPIHLRKWWRLRGVGELEKYFVSGKAIHYNEEINWKKISDHKKSLWYDSQNFQINMGHEYSKRTS
Ga0335061_0019464_1772_2143F041648N/AMNFLTEKLETLPNTLTDNALTRYYELRIKYLEGEQERLRNESRADYLITLDFWIYAQRMIESYVIFHKESPHEYYYDVLKTILKNLESHNEKAEDTAINRLRLEVITRCNSAIVKCEEITAAR
Ga0335061_0019464_2169_2423F021732N/AMSITKYTVKCCLDKKLKHFVHVIFSSGFGLYGQTKPHSPDDNIEVHGWTFEPHDLDLQLYPNINRFNLMPLVDENEMNWVIIND
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