NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335061_0028917

Scaffold Ga0335061_0028917


Overview

Basic Information
Taxon OID3300034168 Open in IMG/M
Scaffold IDGa0335061_0028917 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME06Apr2016-rr0183
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2963
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002996Metagenome / Metatranscriptome514Y
F014581Metagenome / Metatranscriptome261Y

Sequences

Protein IDFamilyRBSSequence
Ga0335061_0028917_2327_2962F002996N/ALLNKPNKRLNSKKKRLNRPLKCHDGLSESVSNTSERLIVKQKTIRVLLDTGSSGDLLFVQKGSQKYIPTMKRAVPQSWGTSNGTFKTNKVGEVTLSFIEYSLSKSVHLTPDIVEYDTGATAPLYDLIIDKQTLHDIGAVLDFKEKTITIDNILLPMRNITNLQLKPSLTRALRHNTCQAQEPVSTRNATERVIEILDAKYDKANLPAIVRDN
Ga0335061_0028917_722_1405F014581N/AMSSAATSELNNADCEKGHVSQRPPISYATSKDEASIKASCETIKMKTPEGEVKVAVLGDSPGAEEYLQHINSFARMLERKKVSDDLLKLAEAVASLKAPVRKLRAAPPGEKPTDKTVRLEQLKAAVDKLVEAEIHEDVKLETVYEMFRKTLMEDPELQWDRIVTDMHTKDPGEDLKGAKHDGIHGKSSKSLWECIDFHKRTINSIDAAEQQRLYILCHLKKPAKSSI
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