NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370480_0009361

Scaffold Ga0370480_0009361


Overview

Basic Information
Taxon OID3300034169 Open in IMG/M
Scaffold IDGa0370480_0009361 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3460
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9142Long. (o)-147.835Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001758Metagenome / Metatranscriptome640Y
F042356Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0370480_0009361_2565_2762F042356N/AVHQHGVSDSGGFDQPFETAQRKSPKGGQKERTTREGHDGSAGRVKNFRAPAMLKTAPLDCEQKAT
Ga0370480_0009361_2850_2990F001758AGGLNQAGWFNSSQIGPQGAVVEAEFTSSSGGVRAPSVNAKKELGDEER

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