NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370487_0175249

Scaffold Ga0370487_0175249


Overview

Basic Information
Taxon OID3300034170 Open in IMG/M
Scaffold IDGa0370487_0175249 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_03D_16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)707
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9141Long. (o)-147.8344Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012876Metagenome / Metatranscriptome276Y
F049748Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0370487_0175249_41_286F049748AGGMDIKQDPNAIPNFNSGGRIGELQPNEPEQAQSSVELDPTAGGDGAASEAAQHESLLDAGGDVREDASKKGRGAIDGLVGAP
Ga0370487_0175249_512_703F012876AGGAGMTRTTSQFAALALSALMTLGVVAGMNGLATAQYAAADSLEMARYGQAHVAVQHVTVVGHRATA

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