NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314773_055271

Scaffold Ga0314773_055271


Overview

Basic Information
Taxon OID3300034171 Open in IMG/M
Scaffold IDGa0314773_055271 Open in IMG/M
Source Dataset NameCryopeg brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - CB1 2018
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1165
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Cryopeg Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.2944Long. (o)-156.7153Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034190Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0314773_055271_70_918F034190N/AVLQHLIDTRSAFLNGDWCFINAVLGLMSPSATHPCPICIVSHKNYLHAARYRTPHDRHSLDRTHSPLLIIPPERIVPTPLHLFLGISNRIILDAFSELLGEAVVLEAVQRTKTVHSAGCTGASDLRDLNGPEISKFIKKECSMSALAAAGALSPVADSTKASHSVLSRWLQQLHHSLLRSGDWTADDIDTWRSVVDDIQQHWQSEAHSAPFPKLHMLRHSIDFAERHRFLGRASEAQIESYHASFNALFHKQHRNMSSNTAERLRRSLADAALHAVQPFVQQ
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