Scaffold Ga0334925_000039

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0334925_000039

Scaffold Ga0334925_000039

Overview

Basic Information
Taxon OID	3300034173 Open in IMG/M
Scaffold ID	Ga0334925_000039 Open in IMG/M
Source Dataset Name	Biocrust microbial communities from Mojave Desert, California, United States - 21HNC
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	91527
Total Scaffold Genes	91 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	52 (57.14%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	34.7856	Long. (^o)	-115.66	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010196	Metagenome / Metatranscriptome	307	Y
F094358	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334925_000039_38345_38707	F094358	N/A	MLDLDGLQVAYLGVALAHYLDTESGDIIDQPLDDEPPGDATRYRRIPTRTAESEAEDRRLFVEKLPLSVTREHLARLVDDASAFRAALTEDRRTERSFFNFKNDRATLAIEEWLRSEGLL
Ga0334925_000039_52956_53192	F010196	AGCAG	VSGIRLVIGAIVMALAVPITLFLLLDLHTRGQFATIAVTTFCSWGVADLLSTILERPRLKGRSPGDALKEDWQRRGNE

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.