Scaffold Ga0373896_018898

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0373896_018898

Scaffold Ga0373896_018898

Overview

Basic Information
Taxon OID	3300034192 Open in IMG/M
Scaffold ID	Ga0373896_018898 Open in IMG/M
Source Dataset Name	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A4A4.3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	662
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry → Uranium-Contaminated Sediments Microbial Communities After Treatment In Bioreactor, Oak Ridge, Tennessee, United States

Source Dataset Sampling Location
Location Name	USA: Oak Ridge, Tennessee
Coordinates	Lat. (^o)	36.0103	Long. (^o)	-84.2696	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F085867	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0373896_018898_399_644	F085867	N/A	VPPNDVASPERPLSAREVAPRRGAPKFGAGADGWDAYNNWLDRVRQPAQPSRQAVISKSLYSVSSYKNWADKARGAFDKAK

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