Scaffold Ga0370501_0000060

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0370501_0000060

Scaffold Ga0370501_0000060

Overview

Basic Information
Taxon OID	3300034195 Open in IMG/M
Scaffold ID	Ga0370501_0000060 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_17
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	17235
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (61.11%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location Name	USA: Alaska
Coordinates	Lat. (^o)	64.9096	Long. (^o)	-147.9451	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022789	Metagenome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0370501_0000060_8600_8857	F022789	AGGAGG	MAYSTRIIAGVAVEESVAMFEWRNLHIHIVTCEPLTVAEVRTIERMLPKVASVGQFADVVGMVFGRSVRIRTQRPSMDIRLEVGR

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