Scaffold Ga0370501_0013066

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0370501_0013066

Scaffold Ga0370501_0013066

Overview

Basic Information
Taxon OID	3300034195 Open in IMG/M
Scaffold ID	Ga0370501_0013066 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_17
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2317
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location Name	USA: Alaska
Coordinates	Lat. (^o)	64.9096	Long. (^o)	-147.9451	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F047938	Metagenome	149	Y
F069288	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0370501_0013066_1244_1504	F069288	GGAG	MNNASIRDGLLATLTECYEADTAHFVSLPKQIVDSSSAREVISDLRNEGYVEEQERGVIRFTRRGYESLRERFDSTPNRPSVLMAV
Ga0370501_0013066_488_808	F047938	GGAGG	MKITFCVLGILCFAGMAFGQAGGATSSGISAEPTVYEFQSHVGHAAQQGMGQAQDIMETSINVSAHGVRPLWEVAKPAYVAPLGDSARLLRLEHMSAKKAEIVWTN

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