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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034200 Open in IMG/M |
| Scaffold ID | Ga0335065_0003590 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11045 |
| Total Scaffold Genes | 34 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (64.71%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010764 | Metagenome / Metatranscriptome | 299 | Y |
| F030059 | Metagenome / Metatranscriptome | 186 | Y |
| F036765 | Metagenome / Metatranscriptome | 169 | Y |
| F037700 | Metagenome / Metatranscriptome | 167 | Y |
| F048261 | Metagenome / Metatranscriptome | 148 | Y |
| F056403 | Metagenome / Metatranscriptome | 137 | Y |
| F074911 | Metagenome / Metatranscriptome | 119 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335065_0003590_1141_1359 | F037700 | N/A | MKKYRIKKQTYGNSTKYFPQERWFFSWSNIFAYEVYFDGGYDTLEEARKRLCEYCREPVVEYLNFDPSRDCK |
| Ga0335065_0003590_1752_2042 | F030059 | N/A | MNETLNKNLTLIQEVANKALELHKNSTERFGGVNYANLRVVDVWVKYSIHEEDLEYGVLIEECSPTAYDFQDYMLEYLKDNLPNNLGWSIYVELDW |
| Ga0335065_0003590_2193_2363 | F074911 | AGGAG | MTMILNEEILKLVKEHFEEDWDENDGWEYSGNFDAFVKFAQEIYDKAYDDGCFDNY |
| Ga0335065_0003590_4581_5138 | F048261 | AGGAG | MTEQQLNHKLDVSKIKTLKDVKNVFECMNLYASAEEDNEQYKLLKEYFTIPYEAQEIKLELPRKSLEEISQEFDEKIDKQIEDVEYKFAQLKYYQEYQFSKKITRIIEDIEYARRNGSFPAKLDYSKLTATGGNITSSFVIKEGGKEVGYYTFGSGYFRYYMRKKPTAIVRFFMKTLLDFRWVDV |
| Ga0335065_0003590_5442_5627 | F056403 | N/A | MNKIEIGSKWKHKNSNDVYVVMEQYSHRVFLKHELTGTIIKLTIGHLNPDGFNEYERIEN |
| Ga0335065_0003590_6876_7202 | F036765 | AGGTGG | MTIKATEFLKLFSKAKQLDLSVEVYEDKDDDYVIRIYEMFRSEGFDEKMFITQKGESNWNKASYTIDGMMDILDEQLEEKRQEKIKEQKRQELLARLTDFEKELLGVK |
| Ga0335065_0003590_989_1144 | F010764 | GGAGG | MIEIKKSYVVELTEQQAKELYWILKDVNLDVDNELKLVYHELKKIFDTGIR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |