NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335065_0010115

Scaffold Ga0335065_0010115


Overview

Basic Information
Taxon OID3300034200 Open in IMG/M
Scaffold IDGa0335065_0010115 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6667
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (72.22%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000441Metagenome / Metatranscriptome1136Y
F001125Metagenome / Metatranscriptome769Y
F003422Metagenome / Metatranscriptome487Y
F007644Metagenome / Metatranscriptome347Y
F085700Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0335065_0010115_1228_1881F003422N/AMTNYQKYTWICPGDCDALIEYTFKDGYGWPNGVMDLTCRCGTPCILLSVVDATIPSTTTTKEETMETTTIGSDAFHSPEVAYNPDLLVTYKVIKGYSDPEFTTSKVTSLEWDLHNGRQSQKRLGLLESNINTVKDIITEAYADSDDQETLRAIAEALNIELVRTVEFTATIEVSGTIELNILEDYDFETEITDNLYVDSQSGNIEIGDTEICYVREA
Ga0335065_0010115_2430_2795F001125GGCGGMGDRANFGFKDQKGDTVFLYGHWAGYDMLAKLANAVQAAETRWENPSYATRIAISHLIGEDWNQTLSWGIYVNQIGDNEHKVPVVNWSSQTFTLYEEDLETVVFSSSLAEFVDKYSRLVM
Ga0335065_0010115_4329_4481F007644GGAMKLHLISLEQDLEENPCSIHVVDIEGQIYATKHLLSVATDIMNSPSERYE
Ga0335065_0010115_5104_5247F000441AGGAGGMKMSDEYINDQLSKAQTLLWGGSETENIEAHNIISKLIRDRVEQVGL
Ga0335065_0010115_5844_6188F085700AGGCGGMAKANEFKAAEKLADSLNNANFSPAVMANVLTTEYTLYTQDRLMELIKYIVHYQSLRFNTEWDKGQTSEGLVTASYLQDMINLKYGEADRNQIVKSLEETRVRDPKYIMDLDSF
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