NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335065_0635372

Scaffold Ga0335065_0635372


Overview

Basic Information
Taxon OID3300034200 Open in IMG/M
Scaffold IDGa0335065_0635372 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)619
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003541Metagenome / Metatranscriptome480Y
F077298Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0335065_0635372_1_384F003541AGCAGMARLIPRKQIEEQQNISSSFSVGQNLTVGRDVVISGSLFVSQSFFLGNDTGSKNEITGSVFLTGSLTIDGDLFVGAPDTVLSIKASGSLSSDDTQRYAGILAKDFGANLPTLYVSSTDGDDTNDGRTI
Ga0335065_0635372_384_617F077298N/AFTLNLENKRFIFDILEIDDVRDYIDVYLFGVKQPQDRYNAEVIGNNIIVTFVADITRLPNEVNAANFEIKGKIAEIV
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