NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370495_0000153

Scaffold Ga0370495_0000153


Overview

Basic Information
Taxon OID3300034257 Open in IMG/M
Scaffold IDGa0370495_0000153 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34402
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9142Long. (o)-147.835Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022145Metagenome215Y
F034486Metagenome / Metatranscriptome174Y
F044785Metagenome154Y
F054439Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0370495_0000153_21243_21614F044785N/AMKEALKNTTLNQYFREKQFYCYYELKDVGESGSFSFAKIRKVQWDGLQATERNGLVWKLSDEISRPKPCDGLSLPPLPSYLIIAFSQEFVLIRFNKIVDLRNEGAISISRSKAESIADKIIKT
Ga0370495_0000153_2353_2826F022145GAGMTPKEIKNENFTVQVGYSDEANEKKLLKFISKSGDEFEISAEQLSSMLIGGVNSETLEATFVYSNKINVVEVGRQLECVLEKDMKKGDRIRLNYMHPYPVEFALIEQAYGIAKVNMDVPVFTLTREYIDKIRAMIKPEQENFLQKFYQSFKNIKLGK
Ga0370495_0000153_2828_3067F034486N/AMIEETEMSLKQKKIVLAQSEHAPIIIELLKDCMPQPALIGKTEFETVVNAVTLDVHGTLLRRMVDYLDEIRKGSLHEPK
Ga0370495_0000153_7676_8149F054439AGAAGMVFIKRKASTMKQMAYARRILGAQGDSKKSIALDVGYSPTSANSIVSHIESKPGFNNAMAALAIDSNNLALAAMHEFKARGFGDFSNKDLIGALNAIGSAWSRFNAGLKEKPITESGNKLRTIILNQIENQTINPAAAESAPPVVVDIEPTKEELDF
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