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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034279 Open in IMG/M |
| Scaffold ID | Ga0335052_0002216 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2014-rr0163 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12198 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (15.38%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005050 | Metagenome / Metatranscriptome | 413 | Y |
| F008936 | Metagenome | 325 | Y |
| F024730 | Metagenome / Metatranscriptome | 204 | Y |
| F030677 | Metagenome | 184 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335052_0002216_1268_1807 | F005050 | N/A | MACVSYCDSSLLDHNLVNCNEYKLGGVSAILVGACGTELVDPSDAVEVQALITAGTAKLIEDIRFALPAGSPVTVDSPIGCGTPIRINEDRTATLYDANVTDENNTFWNDVNNRRIAWVLAFMCDSGKVIYINPPVGITTSANFILPEQNNELQRYEVTFSWRDKNIPAQYDAPAGIFG |
| Ga0335052_0002216_5242_6153 | F008936 | AGGA | MASFDSLVNQKIKLFESVPDKLATAAIKTQAEIWRKIRPILDDMDVSAAGNIEQTEGNIRRIGLIADELKKVLAGSEYKEAVRAFLGSIDEGVQLTNEIARTFESAFEPTEVQKQLLQISKQNAINTFFGAGLDARFTQPFLEQLTTNIAARAPLREAVVALEGIVTGTEANDGRLLANIKTTATTAQAVADRSYSAAVNDELGIEWFEYLGGEISTTRPFCENREGGIYHRKEIEAWGAGKNSAGIRDIQDGTWAGRIDGTDSKSIFTLVGGWNCRHYLVPVPERKVPDTVKARARAEGFID |
| Ga0335052_0002216_8912_9958 | F024730 | N/A | MCIESLLGLRGCESPEPSTGLYIDDLGINQTFLGQLITDQYRNGVELFEDKRAFAWRKLSSDVLTKLSPMMKSDTIIESKRVGQVVSNYANVQTALGAGNYGGIRLKIDPNTVSYLNFYLADINLAIASSNTNVPVLIFDMTTGKLLETITYAEGALDQFIGKTFTSAKRKLDIAIVYESTMNTVKFTPKKGVCTSCGGGPKEAHMCPFVDAIGIELTTDGTNVLTSTSSKYTTGMSITYNVNCDRQGWLCSIGGTMALSLAYATAVEIYNYALTVSPNQRVNTTVIVNRGSKPFATADAFEGIVAARDIAATRYSEDLGATLQNMRLPDDTHCWDCRKNMKYVTALP |
| Ga0335052_0002216_9960_10535 | F030677 | N/A | MPTPAEIQKNLDELYNDWTNKFTALYGPVRELKRIMFKRIFGTGSTGGTNTAGNKLPTVLYKTTPIYVSPRTLANAPSSFKVGKRGEPIKSLYFPDGYAQLKKETSRKLPLELTGRLKGGFLSQEVITEGLTAGIGLPDSEKEKAQGLQFGNGKRFKGYGPIFQPTPEEQAEMLEDHAAELVQQIINAMNK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |