NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334997_0473123

Scaffold Ga0334997_0473123


Overview

Basic Information
Taxon OID3300034280 Open in IMG/M
Scaffold IDGa0334997_0473123 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME10Aug2009-rr0048
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)786
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004995Metagenome / Metatranscriptome415Y
F029658Metagenome / Metatranscriptome187N

Sequences

Protein IDFamilyRBSSequence
Ga0334997_0473123_1_258F029658N/AMINLGRAVGLFNRFSPKISKGIGQVANIARNVGQAVQNVRNIGSTVNSMSGGRIGSSPFGQKIQEITNKVESGANFIANNEGKAQG
Ga0334997_0473123_294_779F004995N/ALGFYKSDRDKLILLPYLNNIYSNSIVNISGDEAIIIKITGDCILSGNTIDNFGLTTYQPSNIIFMKPIDVASNGLLKYNNEDGGDSFQYRISNIEQITYFELSVHNQDDEFIPNFSDYILLLQFIRHTTEDNKTNSLLETLIDYVKQIYLIISQIVFPPSY
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