Basic Information | |
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Taxon OID | 3300034282 Open in IMG/M |
Scaffold ID | Ga0370492_0021675 Open in IMG/M |
Source Dataset Name | Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2638 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Alaska | |||||||
Coordinates | Lat. (o) | 63.8785 | Long. (o) | -149.2588 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002261 | Metagenome / Metatranscriptome | 577 | Y |
F003186 | Metagenome / Metatranscriptome | 502 | N |
F010139 | Metagenome / Metatranscriptome | 308 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0370492_0021675_1336_1662 | F002261 | GGA | MPNWPSIEAFVDGVISQTFGEPVVYQPVQAGAAQGSAFTVTAVRHLRVREESGAMANFEEISVNSSDFSNPPAKGDWVTAWGAQYVVTTVRQPDAYGMLSLALLQRSS |
Ga0370492_0021675_294_449 | F010139 | AGGAG | MDSVFMRSPEGEVKEVEATTEKLTILMASGWHQVPAPAAAQKPVVVAEEEK |
Ga0370492_0021675_460_963 | F003186 | N/A | VINPKTILGEWVTALQSCPDLVTAIGGDANGIRAFLEGLATDNNLRLAILQMPPGSILVAWNGTTPRRLTGGSLHFAHRFSIYLRAPEQNSTATYADLFWLLVSAIPTGAPSWASLLHFQIDPDCYPMDMDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE |
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