NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370492_0156306

Scaffold Ga0370492_0156306


Overview

Basic Information
Taxon OID3300034282 Open in IMG/M
Scaffold IDGa0370492_0156306 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)932
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)63.8785Long. (o)-149.2588Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005213Metagenome / Metatranscriptome408N
F025071Metagenome / Metatranscriptome203N

Sequences

Protein IDFamilyRBSSequence
Ga0370492_0156306_1_303F025071GAGGMIQHSENSRREMTNAEAGVVGAVLGFGLIALLLYLVVDRYHIRKEQLAEAGLYLFVIAAAVIAPVLRKFTTRGRRSKRPPFVIPARKDERAIESAWNQNAV
Ga0370492_0156306_350_790F005213GAGMEPERDAQEELSSMASSATKMANEPEQTGEERQPDVQLQDVLFSALVTSVCYWTTIFLLAIVGTYLIDWWLTHPGPYAAPANDPWGITTPPWLILPLAPIGVVGSLGHAVWCALRGQRTWKMLITAASLVAVMGCSKLLEIYLAPM
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