NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370492_0200108

Scaffold Ga0370492_0200108


Overview

Basic Information
Taxon OID3300034282 Open in IMG/M
Scaffold IDGa0370492_0200108 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)814
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)63.8785Long. (o)-149.2588Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021908Metagenome / Metatranscriptome216Y
F024463Metagenome / Metatranscriptome205N

Sequences

Protein IDFamilyRBSSequence
Ga0370492_0200108_20_268F024463N/AVIHVLRMPTAKEMQDHERASTSVVAARRSIETRAFLEPSGALYDKLHISHDGYAGAVPIVHKSAAVSEVIAQLAIEADEDPE
Ga0370492_0200108_415_678F021908N/AMDGCTRCGADWKAIDVSHGPRCQKNRLDEAMDSPSGVLVRRGFRLLNAKGLGLTITLADITEEEFRVLELIETERQEQMKSGDGRGA

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