NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0000336

Scaffold Ga0335007_0000336


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0000336 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35481
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (70.27%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004405Metagenome / Metatranscriptome439Y
F038549Metagenome / Metatranscriptome165N

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0000336_31907_32479F038549N/AMTLDISTQTGFPPTFLNAFVNSELQQFGLMPTGPNPFQPFFPAQSPMNIEDVYNDSLYIRNNPDGVVIMFDRLIRFRPSPFYRHKREQLVYFIYGPNLSKLFDTTRVIIECLDREDAAAQDLNTWIVANPIIGENDQVITPNVYFHNIKVYQADEARDIAELASARTLFLNKLVIEYDYHTSDSVSRRYS
Ga0335007_0000336_33161_33610F004405AGGAGMECCPETDFLYPMKADVYHPIIKQTQYGQATKDWVYDRTITCNATPVGGAGTEDIKPETFLQYENKLIARTKQDPRTASTGSDNAVTNILITNIRDSEDKLIYRETAGPRAGRGTIYEVATVEPFTGPFNSTEYYKMLWRRTENQTVGD
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