NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0000575

Scaffold Ga0335007_0000575


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0000575 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27986
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009064Metagenome / Metatranscriptome323Y
F020851Metagenome / Metatranscriptome221Y
F044490Metagenome154N

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0000575_22341_22463F020851AGCAGMNKDLVNLAISMTEIDTGITLSLQEREDMVELILARINKT
Ga0335007_0000575_23129_23608F009064N/AMIVTLTPEEVRVCTMLGMERWLTKFGSEDRPNYAKGKTDGLLEHELLANVRANVCEWAVAKQYNVSWNVPWYPNALHPQRKGLADLSKNIEVRSVRTQTSIPFWNKDKDNYIFGAKVLDTEYYSKVEVYGHIKASDFMTDKYYDNYISGWRVPTSEFSE
Ga0335007_0000575_27332_27562F044490GAGMMRIRVLRASKEEKVAVAMGRLLADFHLDLEKVGYYLAKATPHVIYRRALEVLASAEFQENEVEQNRIGYRNDRLY
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