NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0002187

Scaffold Ga0335007_0002187


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0002187 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15445
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (79.17%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002794Metagenome / Metatranscriptome529Y
F083894Metagenome / Metatranscriptome112N
F085392Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0002187_13469_13645F085392AGGMSFFIASERLGKIGDPYTVKDGINIDALLAGGFIVRAEVSTTEEEKPAKTKPKKASKE
Ga0335007_0002187_4601_4813F083894GAGGVSAFDEKQIGATPIEIVDYLRGVIDTLRAEKALLEKRYADLEASRETWQKLAQAWEWLADNKRIVPADEA
Ga0335007_0002187_5756_6040F002794GGAGMGTLERQMSDGVAWNQGELSEETRRMVLEQAMNTNHTMAIFGLMDDILAVSQNPHASIIRRLRTMKNQLSLNDPMPLYDVTTLDQAIKALEAHS
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