NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0003877

Scaffold Ga0335007_0003877


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0003877 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12016
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003265Metagenome / Metatranscriptome496Y
F004432Metagenome / Metatranscriptome438Y

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0003877_8874_9158F003265N/AMRWFFVLLVSCFFWASAKTPCIISDFYRLSWINDPTLRHIELSRWLEVNGDGCSPEQLVGIWNNLALWAGASDSAELRAKVLYYYARAMEREKK
Ga0335007_0003877_9398_10132F004432GAGMVTAKKVPAKTAAKAPAKVAPVKRRTPKPKVVAPVVKQKPAEAAKTDAIGRITDLIKWVDSPFKLLTVILLSFLAFAGYFAWDSRQVILQAIQNQDHMPQLVKQDDLVDPAKSLMKDVDGLVVLVHKANLTTNSRTTVLAINADGSREKKIEGTVTSLFNASPDRNAAMVAMLNNEVLCEEFNPSSKVGEWGVKQGVKFMCRGSIPPDPGKFAGYLAIGFKEKPEDISALKTRINLASTDMSDE
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