NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0011698

Scaffold Ga0335007_0011698


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0011698 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6970
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051078Metagenome / Metatranscriptome144N
F085678Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0011698_4274_4507F085678AGGAMNILLLKEHEDGSATYSFDITIEERELLINFAIITAIKNGINEGAKYVGDTSLGNPECGTSDSVHGEGEQSRESEQP
Ga0335007_0011698_5507_5845F051078AGGAMDSSTKLKPNDIALILRPTIVDGKYTNTFQVLVSGFGPLTISEDDVNNLIGMATILASVIPHMEEDEQLANKLVEYCGKMFGDLGDFVYNPNHDSFGDGSFTINTKTVGGMQ
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