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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034283 Open in IMG/M |
| Scaffold ID | Ga0335007_0042737 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3519 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000258 | Metagenome / Metatranscriptome | 1443 | Y |
| F001900 | Metagenome / Metatranscriptome | 620 | Y |
| F005054 | Metagenome / Metatranscriptome | 413 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335007_0042737_1220_2002 | F001900 | GGAG | LDNSVLLVQAASGLERMMHANQNGPLKDSTVAQISAYVYYEAAVISKLTTNKQFQSAFNRIIFDQIDTDFGNYIDALARSKPKSLHHVYEWKKTGNKSARLFKLNKISEQGLSFRVNYDFLPSRSLVPSSNSRRRHMFIDKASVMEQGNPLVIRPKNADRLVFEVDGETVFMPKGAAVTVKRPGGSAARNQFTLAHSRFFSGRLVNESIKRSGFQKIFNSSMTKALKVPSSIKKVQYSFSANTIRSQADSALALSFGGAM |
| Ga0335007_0042737_2420_3400 | F005054 | N/A | MAEVLTRSQSPITHQVFWNGDVAIPSAAPTVKIYDVTMDPAITPAISPTHLLTMLTSVEDENNPGSYAVNVPYQYTDRNRTLRLRWEYTVQGTSVVKDDEIFVVTPYVDFNHIQDMEFSTDSSDPNYKSYKELIKAEKYARKQIEEYTGQKFYLYDDLYVINGYDSDTLPLPAKIAEIHELYSNDILLLDTINDIDNWNYPVEISESGYGIRINRSSLLDNTVYTANGMVPPSIHDYSGVFRSGVAYKIQGRFGWERVPDNVELAAVELMKDYFSKDTMWKNKYVKKISTFDWDFEYTGEAYTGTGNSYADNLLADYVLTTKVEII |
| Ga0335007_0042737_711_1196 | F000258 | N/A | MIELRKYLWKELHTRNIFDEDDYWSDNLNENIVPIIPVQQSAEMNQFLSGKKHIVYDKIGMSYEDNWLICCEQILFTLYSTSVADINEIRNYMTDEFRRMDESARDINKWSGLSDKFKFHTIWVADISPTAPSEELQGFFSAEVILEIKYSRITDSQGRFL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |