NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0044333

Scaffold Ga0335007_0044333


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0044333 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3449
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020904Metagenome221Y
F049636Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0044333_1131_1346F049636AGGAMTGKEALDKLEDGFTLRRIAWKPDIKCRAYFSDVKEVPEYVPNDPKFESYVSIFDALDSGDFLEDDWEIVE
Ga0335007_0044333_3_473F020904N/ACPYLDPGEDYLPYAIENKHIGSNFDDFLKTNNIELKRDINWAVKMLAAGKMMSREGNPSLTLFPKKYDHAESTITTEDLFAEDWVIVPNKTFKDVLDDLYAGKTIRRKSWHSDWGVGKYARYGKLIYLDLIANDWEVVDVIAEIDQVQKDIKDGKI
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