NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335007_0046607

Scaffold Ga0335007_0046607


Overview

Basic Information
Taxon OID3300034283 Open in IMG/M
Scaffold IDGa0335007_0046607 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3355
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F018352Metagenome / Metatranscriptome235Y
F093770Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0335007_0046607_1217_1426F093770GGAGMITLKHSVNLITEIDEHKMPDNLLSAFLNLSEVEMEMLLRQTFISALEGEGFLDVINAGNSWATVKVDK
Ga0335007_0046607_1788_1973F018352AGGAMGKFKDTLTEILAHDECYGAGWQFVGNAIDYDVWACECNPYNIPADEIQEYHQLFTTKEN
Ga0335007_0046607_1973_2182F000808AGGAGMEYNYSITTSYDGELIHTLRVSDMLDAVDAWNKCVDYGTAKEYATYNLSDPLGKMYTKTFFSNGEVVVK
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