Scaffold Ga0335013_0004089

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335013_0004089

Scaffold Ga0335013_0004089

Overview

Basic Information
Taxon OID	3300034284 Open in IMG/M
Scaffold ID	Ga0335013_0004089 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11312
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (16.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039135	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335013_0004089_1191_1823	F039135	N/A	MRRIKTYKKFQESIIVDLSFGNVSDVLESLTIWHDALLNSIRAEEKDIFSTLKLSDDFRDRLNFDDIHDSVEFINSLSSIALKKSQVENSEDYQTFLNKPCKFMFLYDINSNELENPQYLMFQTWNDTVSKWESLKLYKINDDVKKFYDKLTSRTIEITDADQNYIYQTSNGNEWVLQNVDKENDVYKRTFRKEELQELLKDKNVTVNIL

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