Basic Information | |
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Taxon OID | 3300034284 Open in IMG/M |
Scaffold ID | Ga0335013_0085865 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2224 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F022815 | Metagenome / Metatranscriptome | 212 | N |
F098725 | Metagenome / Metatranscriptome | 103 | N |
F100448 | Metagenome / Metatranscriptome | 102 | N |
Protein ID | Family | RBS | Sequence |
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Ga0335013_0085865_1643_2002 | F100448 | N/A | MSNHRRNTTPILFAQQIEQARRVFKPRVFSRGSIAYLGFEDSTSKIIRALQFMPVSALCKTPLEGANSDFMFCLYQILQQLTLLTECEPNHPKAVLAVHRKVLNTLYNHLYFLHSQDWL |
Ga0335013_0085865_1999_2223 | F098725 | N/A | MNPNDKKPFKRKKPFVNNGFRKPMQPEPRSRISYPQPPTAAKRPNNSSDFNKPPPELQHQQHNTNTPSLEVILKG |
Ga0335013_0085865_66_314 | F022815 | N/A | MSSVKTERYSLSFFNWEISLTFAWTKLRYLVIFRIGRHQAHVWSASIEIDCNPHFYVDTENLAKTFIGKLFSEEPNTEQESD |
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