NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335013_0138562

Scaffold Ga0335013_0138562


Overview

Basic Information
Taxon OID3300034284 Open in IMG/M
Scaffold IDGa0335013_0138562 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1666
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011283Metagenome292Y
F021770Metagenome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0335013_0138562_1088_1357F021770AGGAGMEVDHMDPTGPVDMFLRLVMVLTLFGWNVVEGLSLRTPYPATMVALWDSPIWRIALLLAIWLGAEWCPRVGIMTALAVVSYIVDMIQII
Ga0335013_0138562_1_528F011283N/AKSDEVYSNHFDQSQEYSFYNIPMNMIRFNAQTIINHLEYVDEIYIVCESASRSQFIKNKYFNDYNKIKVNDQLQFSNLKYGSNNVSIDGNTYMKINIVGSNSFNFYSVMRIIQTIMGIIMLSVGIYMYIQLQKEKLLKKINILPLIVLVAFGSMALYNGLTSTCSISILLEDYLN
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