Basic Information | |
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Taxon OID | 3300034354 Open in IMG/M |
Scaffold ID | Ga0364943_0039262 Open in IMG/M |
Source Dataset Name | Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1537 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Colorado | |||||||
Coordinates | Lat. (o) | 38.9229 | Long. (o) | -106.9499 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000667 | Metagenome / Metatranscriptome | 949 | Y |
F015101 | Metagenome | 257 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0364943_0039262_3_572 | F015101 | GGAG | MALKGWVVHKVNRLFTRVDLPPRATPLGKAVMRHKGEKREPELRTTAGHDVLPRPQHLGAYAPLVAAMREELEQFVASHVRMHLAIAEQDRYLLTSIEVECVAGDEPRELLHRFIREFKPRQIKAYIAKEVIGRLPNASAIDLAHFGGLNVAADGGNGVEADEAYGELLAELRSSEPHTASRPYQVTLKG |
Ga0364943_0039262_576_935 | F000667 | GGGGG | MKSGRSRKGRQHGNGAPDEHVEAPLIWTFTGPFATCLGDMEDTFRRAIIQVGDVSRIAVQIDLSLPALKKRVDAGESIQPAWGQFVERLTQRYGLPTGPRVRHVKMAGPLATMVIAYRR |
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