NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335039_0066335

Scaffold Ga0335039_0066335


Overview

Basic Information
Taxon OID3300034355 Open in IMG/M
Scaffold IDGa0335039_0066335 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Oct2015-rr0135
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2143
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002303Metagenome / Metatranscriptome573Y
F007751Metagenome / Metatranscriptome345Y
F010836Metagenome / Metatranscriptome298Y

Sequences

Protein IDFamilyRBSSequence
Ga0335039_0066335_1214_1477F002303N/AMDIREQYRERAIQFAIEYGFTNVSEHILDIMVSIMCTRDKSSYAGGGFVEAVVANNLYLALSRADTDCRNNIFLLTMCKANCFLNQF
Ga0335039_0066335_3_464F010836N/AYEDLVDNLKSELKDNSDYVDYGKTDHNELRSFPSRTLGSIRRYHQYKDFYVEVCVTPVIRSGYYSGVNLDWNVDYLINGDASYDSPDFYIDDIAHYGNLSKSAATKYAKLAEKKAEKIKNEIVDELEALYNDYSDRYGVTAVFSNGETIYHKL
Ga0335039_0066335_475_687F007751N/AMNQIEELKSVIGKDISQNQSPTCRARLVSVGKANCIFESVPSPYNKFPKPEFVGVKYKVPNWIAWNSFFY
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