NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335064_0173404

Scaffold Ga0335064_0173404


Overview

Basic Information
Taxon OID3300034357 Open in IMG/M
Scaffold IDGa0335064_0173404 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME12May2017-rr0187
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1349
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023295Metagenome / Metatranscriptome210Y
F063343Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0335064_0173404_1101_1289F023295AGGAGGMLLSMLHGLGCQTKVILVPDGQPVQLAEPVRAKVYAFDATGKPVPSSNKVMLPAGWYVLPRK
Ga0335064_0173404_244_1104F063343N/AMNYLILLGILGLFIFGNKVRTNWVSGIKSTLIKLMIPGADRRLFSGFTQSTFSWVRNPASWVRVFNWTGAAAGINGLGGVGGGTLISRRHVLLANHVPYPARPFDIFFANASSRTFTYKVTNIQQVGDTDIAIGTLDRDADPSLNVYRVLPDNWTQYIANKVESFNKMGVTGTNYAFVLPVLYSGQNRKVSTADVVNISLGLAGVNIPAFEVARAFGDPIIGGDSGNPIFAMLGDELVLLGAWYTGPDRGFSVGTFPWLITQRGAIEKIMGQKLRIADMSGLDRIA
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