Basic Information | |
---|---|
Taxon OID | 3300034374 Open in IMG/M |
Scaffold ID | Ga0348335_009605 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 5453 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (8.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.124826 | Long. (o) | -75.260873 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002333 | Metagenome | 569 | Y |
F022401 | Metagenome | 214 | Y |
F038646 | Metagenome | 165 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0348335_009605_1197_2147 | F002333 | N/A | MSTQLLQQELNCAQSLIYTRTNISRAFQDFDDTEIAGIYLRDDNCLVVRRDGSEQAYPRELIKLAFTNYTNRLKDFFSYLGPNYRGPSVWHNNAYVMFKGWHYSHALGHLTHNAKLQAHWADKFIHVTEQQKVISLLQSDQTDLGHLVAPEGLRLPNRPIDLDSDMEDQESGVPPVHAEPYCSCGSFQRQLLNLSEFQSEIEGFKPWCIHLSWFGKYRELLCKRTEARNASPSGTPEKCVAWWYAPPKDSISDGRFVLLYTNSGAQSPLSHWRTYKAKEVFTQYHAWDLFFNMMEAGYVPFPGVSLPQLKSAIKKA |
Ga0348335_009605_2144_2572 | F038646 | N/A | MNDSDDILEYARQLAMQPPMTPPKDHDYRLQISPDTHWELVKLAAELRMDPESYAEEILNMHAEDAISKRVVAKAYNDPSWVTKLKLECVDEPDGTMSIHIEWDEKDPDLQYWTNLGAKGQENFILNALRFACNDVLSDHVD |
Ga0348335_009605_4958_5302 | F022401 | N/A | MDTTQEPIEVIDAWQRWYQENRAVAQMDEPLVTKDSREGLHNTTNAVDTIGKEIWMKKAQEHFADTIAEFQYELSGKDLYKAFYKAVYENSECARKEYEKIKELLDLLRYHNLD |
⦗Top⦘ |