NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0348335_022226

Scaffold Ga0348335_022226


Overview

Basic Information
Taxon OID3300034374 Open in IMG/M
Scaffold IDGa0348335_022226 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3009
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.124826Long. (o)-75.260873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045425Metagenome153N
F104043Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0348335_022226_2134_2844F104043GAGMKTTRTLKGPKRQAPVTGFDPNLLPVNGRVRPAAPFVYVHYAGAWEFHSTQGWLPQLSKLVAMPGVNGVDERLDLRRAIQGAVSKGGVYINPKDRRLLLDGEEEDEALYFDYARFYDCTDGRKWWVTVGQEPTVTRSGRILWNADEASEVFAAFRAHLRDSGIIEPMHDLVFREKMDSQRARIDNLRGRAGMNPHLSGQLQQAEQQLAAMEAAHAKQVDLDLEQPTIKPRRKRVKT
Ga0348335_022226_839_1582F045425N/AVADGTPYSARWTGPTLITKSHDTTVTVDIEHGGSAPTVSAVTFSLYSPNGTAIVDGAAASESGGTLSYTVTAASMSSQAYAQGWALKFSATIGGDVHEFYNDAALCLARLYCPIGTTDLTNRYSRLAALQTTGASDLQKFITDAWTELTARLYSEALPFWRMRTPSSLRPWLIAQAAVFALDDLALTLGDGGPYREEARRIEESLPRLYNKIRSLMDDNEDNNLDEVHQPASAVIQISSGRIGRYRS
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Institute for Fundamental Biomedical Research
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